benchmark_data: Data used to train and evaluate the classification models. giant_virus_data: Sequences and metadata of giant viruses identified in public metagenomes. neural_network_training: Code used to train geNomad's neural network-based classification model. provirus_data: Data used to train and evaluate the conditional random field model employed by geNomad to identify provirus regions. reference_sequences: Sequences of chromosomes, plasmids, and viruses that were used to build geNomad's marker dataset and to generate the training data for the classification models
This repository contains code and the data for reproducing results and figures in the associated man...
Processed data and code to generate all main figures and extended data figures for the manuscript "G...
Processed data and code to generate all main figures and extended data figures for the manuscript "G...
benchmark_data: Data used to train and evaluate the classification models. giant_virus_data: Sequen...
Identifying and characterizing mobile genetic elements in sequencing data is essential for understan...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.1.tar.gz: MMs...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.3.tar.gz: MMs...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.2.tar.gz: MMs...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.4.tar.gz: MMs...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.0.tar.gz: MMs...
Increasingly rich metadata are now being linked to samples that have been whole-genome sequenced. Ho...
Increasingly rich metadata are now being linked to samples that have been whole-genome sequenced. Ho...
Increasingly rich metadata are now being linked to samples that have been whole-genome sequenced. Ho...
This training dataset is from an imaginary Staphylococcus aureus bacterium with a miniature genome. ...
Entire .tsv data representation for the MetaDome web server v1.0.1 based on GENCODE Release 19 (GRCh...
This repository contains code and the data for reproducing results and figures in the associated man...
Processed data and code to generate all main figures and extended data figures for the manuscript "G...
Processed data and code to generate all main figures and extended data figures for the manuscript "G...
benchmark_data: Data used to train and evaluate the classification models. giant_virus_data: Sequen...
Identifying and characterizing mobile genetic elements in sequencing data is essential for understan...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.1.tar.gz: MMs...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.3.tar.gz: MMs...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.2.tar.gz: MMs...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.4.tar.gz: MMs...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.0.tar.gz: MMs...
Increasingly rich metadata are now being linked to samples that have been whole-genome sequenced. Ho...
Increasingly rich metadata are now being linked to samples that have been whole-genome sequenced. Ho...
Increasingly rich metadata are now being linked to samples that have been whole-genome sequenced. Ho...
This training dataset is from an imaginary Staphylococcus aureus bacterium with a miniature genome. ...
Entire .tsv data representation for the MetaDome web server v1.0.1 based on GENCODE Release 19 (GRCh...
This repository contains code and the data for reproducing results and figures in the associated man...
Processed data and code to generate all main figures and extended data figures for the manuscript "G...
Processed data and code to generate all main figures and extended data figures for the manuscript "G...